D dimer - Factbites

D dimer - Factbites
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Topic: D dimer

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	Dimer - Wikipedia, the free encyclopedia
		Its more common usage refers to dimers as certain types of sugar: sucrose, for example, is a dimer of a glucose molecule and a fructose molecule.
		In this case, a dimer is a protein complex made up of two subunits that are not necessarily covalently linked.
		An example of this dimerizing activity involves the RAS-independent receptor tyrosine kinase that activates Phospholipase C-gamma.
	en.wikipedia.org /wiki/Dimer (367 words)

	The Piecewise Diffusion of the Silicon Dimer
		However, the distribution of dimers occupying the two types of sites upon formation is kinetically determined: one third form on rows and two thirds form in troughs [6].
		The dimer dissociates as one atom moves ahead, and the two atoms move up and down the trough independently until they meet again and reform the dimer in a new location.
		The Si(001) surface consists of parallel rows of dimer bonds which are the result of pairs of surface atoms binding together in order to reduce the overall surface energy.
	groups.physics.umn.edu /stmlab/dimer_diffusion/piecewise.html (1843 words)

	C-Dimer / Stealth Dimer
		For growth regimes where there are large numbers of dimers present, we expect that the quality of the epitaxial growth process depends on the area accessible to diffusing dimers prior to being incorporated into the crystal.
		The interactions of dimers with various metastable and epitaxial structures, dimer-dimer interactions, and the lifetime of dimers on the Si(001) surface are currently being studied in our lab to help clarify the role of dimers in epitaxial growth.
		While it is reasonable to assume that the dimer would pass through the metastable B-state before passing off of the row (thereby minimizing its profile in the direction of its diffusion), the energy values shown in Fig.1 are relatively independent of this assumption.
	groups.physics.umn.edu /stmlab/stealth/stealth.html (569 words)

	Dynamics of a dimer on an oscillated plate
		The dimer, composed of two spheres rigidly connected by a light rod, exhibits several modes depending on initial and driving conditions.
		Abstract: We investigate the dynamics of a dimer bouncing on a vertically oscillated plate.
		The first excited mode has a novel horizontal drift in which one end of the dimer stays on the plate during most of the cycle, while the other end bounces in phase with the plate.
	physics.clarku.edu /~akudrolli/dimer (191 words)

	Dimer at opensource encyclopedia
		Among the most common dimers are certain types of sugar; sucrose, for example, is a dimer of a glucose molecule and a fructose molecule.
		In biology, a dimer is a protein complex made up of two subunits.
		A dimer is a molecule composed of two subunits linked together.
	www.wiki.tatet.com /Dimer.html (146 words)

	Polylysine Induces an Antiparallel Actin Dimer That Nucleates Filament Assembly. CRYSTAL STRUCTURE AT 3.5-A RESOLUTION -- Bubb et al. 277 (23): 20999 -- Journal of Biological Chemistry
		actin dimer in the helical polymerization of parallel subunits.
		Positioning of the DNase I binding loop (arrowhead) of one subunit of one dimer near the C termini of both subunits of a second dimer creates a pointed-end-to-barbed-end contact between it and either subunit of the second dimer.
		As previously observed in samples viewed by electron microscopy (7), one subunit of the antiparallel dimer is not incorporated into the filament.
	www.jbc.org /cgi/content/full/277/23/20999 (5473 words)

	Pathway to Diamond-Based Molecular Manufacturing
		The carbon dimer is bonded to two group 4 supporting atoms, shown in yellow: silicon, germanium, tin, or lead – a series which forms progressively weaker bonds to the dimer.
		dimer bond to a new covalent bond between dimer and deposition surface appears to be energetically favored by 1.6 eV for the first bond and by 1.3 eV for the second bond.
		A scatterplot of dimer motions [slide omitted] shows that thermal uncertainty increases as we move from the relatively stiff dimer-holding bonds of Silicon, at bottom left, to the less stiff dimerholding bonds of Germanium, at top, and then Tin, at bottom right.
	www.molecularassembler.com /Papers/PathDiamMolMfg.htm (4814 words)

	Dimer Migration
		The crucial result is that the dimer energy is now lowered by the presence of the other O atom.
		This involves a diffusive jump where one O atom of the dimer moves to its Y-lid configuration and the other O atom is free to remain at its BC site.
		This configuration was found by imposing a pair of constraints so that the two arms of the Y-lid are equal and the Si atom at the base of the Y-lid is equidistant from the arms (see Figure 6.9).
	www.hpc.susx.ac.uk /~ewels/science/thesis/html/node81.html (646 words)

	Dimer Placement Tool
		The CC dimer is bound to these tools by progressively weaker bonds, moving from Si to Pb, facilitating release of the CC dimer from the tool and its attachment to a growing molecular structure.
		The DCB6-X family of dimer placement tools, for X = Si, Ge, Sn and Pb, should be stable in vacuum when used at room temperature, and possibly at significantly higher temperatures.
		Here, we investigate this proposed new class of horizontal dimer placement tools by focusing on the six particular tool tip structures shown in Figure 4, evaluating both their stability and the strength of their bonding to the CC dimer.
	www.rfreitas.com /Nano/DimerTool.htm (2992 words)

	AAAAA: Structures: VL/VH Dimer Interface
		At the same time, there is considerable overlap between the antigen interface and the dimer interface, particularely for hapten-binding antibodies, where the antigen frequently inserts into a deep binding pocket in the center of the barrel formed by the inner beta sheets of the two domains.
		Given the combinatorial nature of antibody generation, the dimer interface residues have to be such that any VL domain can pair with any VH domain to form a functional interface.
		This can be clearly seen in a comparison of antigen interactions and VL/VH dimer interactions in anti-Hapten, anti-Oligomer and anti-Protein antibodies or from a comparison of the dimer and antigen contact histograms (see below)
	www.biochem.unizh.ch /antibody/Structures/DimContacts (134 words)

	A Dimer as a Building Block in Assembling RNA. A HEXAMER THAT GEARS BACTERIAL VIRUS phi29 DNA-TRANSLOCATING MACHINERY -- Chen et al. 275 (23): 17510 -- Journal of Biological Chemistry
		Dimeric and trimeric pRNA isolated from 10% TBM native gel were re-run in 10% native gel (lanes 9-10) and 10% denaturing gel (lanes 11-13).
		the incoming dimers (2 + 2 + 2 = 6).
		dimer, whereas the procapsid served as the foundation for hexamer
	www.jbc.org /cgi/content/full/275/23/17510 (5220 words)

	Water Dimer Results and Analysis
		Examine the water dimer system to determine what level of theory is necessary to determine the PES with chemically useful accuracy.
		Eight water dimer geometries were established by fixing the Oxygen atom separation and then performing a complete optimization of all other geometrical parameters.
		For the water dimer, the DFT methods yield a physically meaningful result.
	www.kressworks.com /Research/Quantum_Chemistry/Potential_Energy_Surfaces/water_dimer/water_dimer_results.html (1712 words)

	Dimer Formation
		Also included is the equilibrium dimer concentration at various temperatures assuming a binding energy of 0.3 eV.
		C after a 1 hour anneal a zero dissociation approximation predicts a dimer concentration higher than the equilibrium value.
		This result gives us an initial pool of dimers to work with, which should be present in as-grown material in quantities similar to those observed for the defect responsible for the 1012 cm
	www.ewels.info /science/thesis/html/node82.html (505 words)

	Diavant - Products - Blood Analysis and monitoring - D-Dimer
		Dimer enables you to rule out deep vein thrombosis and pulmonary embolism at low cost in 30 to 50 percent of patients with inconclusive symptoms such as chest pain, leg pain, and dyspnea.
		Extending usage of the Cardiac reader system - The D-Dimer rapid assay is performed with the same Cardiac reader system device used to determine myoglobin and cardiac troponin T. D-Dimer in Primary Care
		Testing D-dimer as first diagnostic step can help you avoid performing unnecessary, more extensive diagnostic methods and treatments.
	www.diavant.com /diavant/CMSFront.html;jsessionid=AF9D482573F8146D11556C80BE7DF8A0?pgid=3,1,8,0 (307 words)

	Salt-dependent monomer-dimer equilibrium of bovine {beta}-lactoglobulin at pH 3 -- Sakurai et al. 10 (11): 2325 -- Protein Science
		the dimerization constant decreased with an increase in temperature,
		Dimerization of the Major Birch Pollen Allergen Bet v 1 Is Important for its In Vivo IgE-Cross-Linking Potential in Mice
		role of burial of the hydrophobic surfaces upon dimer formation.
	www.proteinscience.org /cgi/content/abstract/10/11/2325 (600 words)

	Four new monomeric insulins obtained by alanine scanning the dimer-forming surface of the insulin molecule -- Chen et al. 13 (11): 779 -- Protein Engineering Design and Selection
		To elucidate the role of the residues buried in the dimer on
		The dimer formation assay was carried out by FPLC with a Superdex
		recombinant human insulin for contrast of the monomer and dimer
	peds.oxfordjournals.org /cgi/content/full/13/11/779 (1778 words)

	Publications
		X.R. Qin, B.S. Swartzentruber, and M.G. Lagally, "Diffusional kinetics of SiGe dimers on Si(100) using atom-tracking scanning tunneling microscopy," Phys.
	www.mrsec.wisc.edu /publications.php (10619 words)

	Dimer.org
		My name is Haim Dimer and I maintain this web site.
		You will find on The Web Standards Project all the information you need to upgrade your browser.
		Here you can find my publications as well as my presentations.
	www.dimer.org (2526 words)

	dimer.tamu.edu
		Bad: installing 1.63 does something to the copies of 1.61 and 1.62 that were coexisting on dimer.
		After discovering a bug in GBrowse 1.62, I was asked if the bug also existed in the release candidate for 1.63.
		I've made symlinks to redirect to 1.63 don't work, so I've renamed the folder for now so that 1.62 really contains 1.63rc3...which looks different.
	dimer.tamu.edu /index.php?page=web (1552 words)

	Role of fibrin D-dimer testing in emergency medicine -- Wakai et al. 20 (4): 319 -- Emergency Medicine Journal
		Variability of plasma IL-6 and crosslinked fibrin dimers over time in community dwelling elderly subjects.
	emj.bmjjournals.com /cgi/content/full/20/4/319 (5391 words)

	GTRI GTRI Authored Books and Chapters
		"Excess Absorption by Water Vapor and Comparison with Theoretical Dimer Absorption," in Atmospheric Water Vapor.
	www.gtri.org /news/authored.html (840 words)

	Dimer at opensource encyclopedia
		Among the most common dimers are certain types of sugar; sucrose, for example, is a dimer of a glucose molecule and a fructose molecule.
		In biology, a dimer is a protein complex made up of two subunits.
		A sucrose molecule, which is a dimer consisting of a glucose molecule and a fructose molecule
	www.wiki.tatet.com /Dimer.html (146 words)

	D-dimer - Wikipedia, the free encyclopedia
		The first patented MoAb of the kind was D Dimer-3B6/22, although others have been developed.
		Plasmin is a natural fibrinolytic enzyme that organises clots and breaks down the fibrin mesh.
		It cannot, however, break down the bonds between one E and two D units.
	en.wikipedia.org /wiki/D-dimer (582 words)

	Dimer - Retrovirology Full text The retroviral RNA dimer linkage
		The implication of varying roles for the dimer linkage in related For the purposes of examining the role of retroviral RNA dimer sequences in the
		A physical dimer is a term that designates the case where intermolecular interaction There are no covalent bonds between the physical dimer molecules.
		Of all hydrogen-bonded species, the water dimer is among the best understood at the present time.
	sidetrack.siteslinks.com /sil/sidetrack-dimer.htm (216 words)

	Works Citing the On-Line Encyclopedia of Integer Sequences
		Broadhurst and D. Kreimer: Combinatoric explosion of renormalization tamed by Hopf algebra: 30-loop Pade-Borel resummation.
		Broadhurst and D. Kreimer, Towards cohomology of renormalization: bigrading the combinatorial Hopf algebra of rooted trees.
		Robertson, D. Saracino and D. Zeilberger, Refined Restricted Permutations, In memory of Rodica Simion, 2002.
	www.research.att.com /~njas/sequences/cite.html (8938 words)

	Publications
		J. Reeves, D. Adolphs, A. Arndt, D. Zwicky, M. Rikel, and E.E. Hellstrom, "Effect of PAIR process on microstructure of Ag-sheathed Bi-2212 tapes," Physica C, 341-348, 2021-2022, 2000.
		A. Elmustafa, and D.S. Stone, "Nanoindentation and the indentation size effect: kinetics of deformation and strain gradient plasticity," J.
		A.A. Elmustafa, and D.S. Stone, "Nanoindentation and the indentation size effect: Kinetics of deformation and strain gradient plasticity," J.
	www.mrsec.wisc.edu /publications.php (10619 words)

	Medical Laboratory Observer: D-dimer: establishing a laboratory assay for ruling out venous thrombosis - Feature Story
		Plasmin breaks down the fibrin clot into specific, recognizable structural components containing the D-dimer.
		The assembly of the fibrin monomer is specific wherein two D domains from different fibrin monomers bind to the B domain, forming a linear polymer (Figure 3).
		Fibrinogen is a large, triobular, fibrous structural protein that has a linear, three-dimensional shape consisting of two ends (termed "D domain") that are identical, with a middle lobe (termed "B domain") containing the thrombin activation site.
	www.findarticles.com /p/articles/mi_m3230/is_11_34/ai_94777969 (1421 words)

	Diavant - Products - Blood Analysis and monitoring - D-Dimer
		Dimer enables you to rule out deep vein thrombosis and pulmonary embolism at low cost in 30 to 50 percent of patients with inconclusive symptoms such as chest pain, leg pain, and dyspnea.
		Testing D-dimer as first diagnostic step can help you avoid performing unnecessary, more extensive diagnostic methods and treatments.
		Extending usage of the Cardiac reader system - The D-Dimer rapid assay is performed with the same Cardiac reader system device used to determine myoglobin and cardiac troponin T. D-Dimer in Primary Care
	www.diavant.com /diavant/CMSFront.html;jsessionid=AF9D482573F8146D11556C80BE7DF8A0?pgid=3,1,8,0 (307 words)

	AGEN Biomedical Limited - Products, SimpliRED D Dimer
		AGEN Biomedical Limited - Products, SimpliRED D Dimer
	www.agen.com.au /products/srdd.htm (8 words)

	D-Dimer
		Plaut D, Shafer D. Utilities of the D-dimer assay.
		D-dimer: Establishing a laboratory assay for ruling out venous thrombosis.
		In Jacobs DS, DeMott WR, Oxley DK, edsl Laboratory Test Handbook.
	www.labcorp.com /datasets/labcorp/html/chapter/mono/cf002900.htm (1014 words)

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In the News (Sat 19 Dec 09)