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Topic: GenBank

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	GenBank Overview
		There are approximately 85,759,586,764 bases in 82,853,685 sequence records in the traditional GenBank divisions and 108,635,736,141 bases in 27,439,206 sequence records in the WGS division as of February 2008.
		GenBank is part of the International Nucleotide Sequence Database Collaboration, which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at NCBI.
		Revisions or updates to GenBank entries can be made by the submitters at any time and can be accepted through the Update option on the BankIt page, in the text of an e-mail message, or as a Sequin file.
	www.ncbi.nlm.nih.gov /Genbank (593 words)

	GenBank - Wikipedia, the free encyclopedia
		The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations.
		GenBank is built by direct submissions from individual laboratories, as well as from bulk submissions from large-scale sequencing centers.
		LANL collaborated on GenBank with the firm Bolt, Beranek, and Newman, and by the end of 1983 more than 2,000 sequences were stored in it.
	en.wikipedia.org /wiki/GenBank (411 words)

	Submitting Data to GenBank®
		The GenBank DNA sequence database is an international collection of all known DNA sequences.
		GenBank is produced and distributed by the National Center for Biotechnology Information (NCBI), a division of the National Library of Medicine at NIH.
		GenBank will provide you with an accession number to identify your sequence, usually within two working days if the submission is received via electronic mail.
	www.nlm.nih.gov /pubs/factsheets/sdgenbk.html (682 words)

	GenBank
		The GenBank sequence database is an annotated collection of all publicly available nucleotide sequences and their protein translations.
		This database is produced at National Center for Biotechnology Information (NCBI) as part of an international collaboration with the European Molecular Biology Laboratory (EMBL) Data Library from the European Bioinformatics Institute (EBI) and the DNA Data Bank of Japan (DDBJ).
		GenBank continues to grow at an exponential rate, doubling every 10 months.
	www.ibpassociation.org /encyclopedia/Biotechnology/GenBank.php (283 words)

	Direktoratet for naturforvaltning - Genbank for vill laks
		Genbank for laks er et viktig virkemiddel for å sikre arvematerialet fra norsk, vill laks for ettertiden.
		Fisk fra i alt 22 truede laksestammer svømmer i dag omkring i levende genbankstasjoner.
		Fisk som fanges i elvene, blir oppbevart lokalt i fiskekar inntil den blir kjønnsmoden og kan strykes.
	www.dirnat.no /content.ap?thisId=500026176 (889 words)

	GenBank Overview
		GenBank records are annotated using a standard set of biological terms and show these annotations in a Feature Table.
		GenBank is part of the International Nucleotide Sequence Database Collaboration, which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at NCBI.
		The GenBank database is designed to provide and encourage access within the scientific community to the most up to date and comprehensive DNA sequence information.
	www.ncbi.nih.gov /Genbank/GenbankOverview.htm (405 words)

	Consortium for the Barcode of Life (CBOL)
		GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences.
		The new "Barcode Section of GenBank" was launched at the February 2005 barcode conference in London.
		In addition to standard GenBank data elements, the Barcode Section has additional data fields related to when and where the specimen was collected and what laboratory protocols were used to obtain the barcode sequence.
	barcoding.si.edu /CBOLDatabasesGenBank.htm (396 words)

	ATCC: Bacteria Collection (Site not responding. Last check: )
		GenBank: AE000008: Mycoplasma pneumoniae M129 section 9 of 63 of the complete genome.
		GenBank: AE000009: Mycoplasma pneumoniae M129 section 8 of 63 of the complete genome.
		GenBank: AE000010: Mycoplasma pneumoniae M129 section 7 of 63 of the complete genome.
	www.atcc.org /common/catalog/numSearch/numResults.cfm?atccNum=29342 (1229 words)

	GenBank (Site not responding. Last check: )
		The GenBank sequence database is an annotatedcollection of all publicly available nucleotide sequences and their protein translations.
		GenBank and its collaborators receive sequences produced in laboratories throughout the world from more than100,000 distinct organisms.
		GenBank is built by direct submissions from individual laboratories, as well as from bulk submissionsfrom large-scale sequencing centers.
	www.therfcc.org /genbank-115044.html (256 words)

	[No title] (Site not responding. Last check: )
		Like the GenBank Data Submission Form, it may be printed and filled in by hand and sent by mail to the address given at the beginning of the form.
		A successful GenBank requires that the data enter the data bank as soon as possible after publication, that the annotations be as complete as possible, and that the sequence and annotation data be accurate.
		Please be certain to indicate the GenBank release number (e.g., Release 64.0) and the primary accession number of the entry to which your comments apply; it is helpful if you also give the entry name and the current contents of any data field for which you are recommending a change.
	www.ics.uci.edu /~mlearn/databases/access-lists/other-repository-info/genbank-text (9186 words)

	GenBank - Celebrates 25 Years of Service
		The GenBank database has remained on the cutting edge of technology and illustrates the dynamic changes over the past 25 years in quantity and speed with which information is shared.
		GenBank joined with sequence databases in Europe and Japan to form the International Nucleotide Sequence Database Collaboration.
		GenBank was one of the earliest bioinformatics community projects on the Internet promoting open access communications among bioscientists.
	www.tech-res.com /GenBank25 (242 words)

	GenBank Overview
		GenBank records are annotated using a standard set of biological terms and show these annotations in a Feature Table.
		Revisions or updates to GenBank entries can be made at any time and can be accepted as BankIt or Sequin files or as the text of an e-mail message.
		GenBank is available for searching at NCBI via several methods.
	rd.business.com /index.asp?epm=s.1&bdcq=GenBank&bdcr=1&bdcu=http://www.ncbi.nlm.nih.gov/Genbank/GenbankOverview.html&bdct=20080714030539&bdcp=&partner=2662601&bdcs=nwuuid-2662601-04960C8D-EDB7-AD28-C6C3-E0B3566DB54E-ym (405 words)

	Beginning Perl for Bioinformatics: Chapter 10: GenBank
		GenBank (Genetic Sequence Data Bank) is a rapidly growing international repository of known genetic sequences from a variety of organisms.
		GenBank files have a great deal of information in them in addition to sequence data, including identifiers such as accession numbers and gene names, phylogenetic classification, and references to published literature.
		GenBank libraries are further organized into divisions by the classification of the sequences they contain, either phylogenetically or by sequencing technology.
	www.oreilly.com /catalog/begperlbio/chapter/ch10.html (7307 words)

	GenBank Overview
		GenBank is proud of its contributions toward this milestone.
		There are approximately 65,369,091,950 bases in 61,132,599 sequence records in the traditional GenBank divisions and 80,369,977,826 bases in 17,960,667 sequence records in the WGS division as of August 2006.
		GenBank nucleotide records are available in the divisions CoreNucleotide, dbEST, or dbGSS and can be searched in Entrez together or independently.
	www.ncbi.nih.gov /Genbank (543 words)

	Nature Debates: GenBank - a model community resource?
		GenBank demonstrates that, even in the fiercely competitive world of science, researchers recognize that contributing to large, shared data sets ultimately benefits everyone.
		GenBank is a centralized repository in that it is available as a single unit in a uniform format.
		No one would deny that GenBank and its collaborating databases have proved to be fantastically useful resources, perhaps in ways that few anticipated at their inception over a decade ago.
	www.nature.com /nature/debates/e-access/Articles/lipman.html (1276 words)

	Genbank
		Genbank: The basic information about all known genes is stored in a database called Genbank.This is a searchable database with a wealth of information about all studied genes.
		This Genbank sample page has definitions of many of the terms used in a genbank record.
		Thus, in addition to the mutations in the coding sequence (CDS) such as missense, nonsense, frameshift that you studied in the Hemoglobin Lab, it is also possible to have splicing mutations, that effect the splicing out of the introns, and regulatory mutants that effect the promoter sequences.
	www.csuchico.edu /~jbell/Labs/genbank.html (763 words)

	BioMed Central \| Full text \| ORFer – retrieval of protein sequences and open reading frames from GenBank and ...
		GenBank sequence entries that are known to be complete or incomplete contain MolInfo_completeness elements with an attribute named value.
		To obtain the nucleotide ORF of a protein sequence from a GenBank XML file, the content of Seq-feat elements, which occur in Bioseq_annot or Bioseq-set_annot elements, have to be interpreted.
		GenBank sequence entries of cosmid and BAC clones, chromosomes or genomes contain annotation of genes and corresponding ORFs and protein sequences.
	www.biomedcentral.com /1471-2105/3/40 (2869 words)

	GenBank celebrates 25 years of service
		When the contract ended in 1992, GenBank was moved to the National Center for Biotechnology Information (NCBI), a division of NIH's National Library of Medicine that was established in 1988 under the leadership of BLAST co-developer David Lipman.
		Today, GenBank continues to be operated by NCBI, which has integrated it with dozens of other biological databases - such as genome maps and protein structures - as well as the scientific literature (via its PubMed and PubMed Central databases) and tools for analysis.
		What is GenBank's relationship to the Human Genome Project" Initiated in 1990, the Human Genome Project was a 13-year effort coordinated by the U.S. Department of Energy and NIH that aimed, among other things, to determine the sequences of the 3 billion chemical base pairs that make up human DNA.
	www.eurekalert.org /pub_releases/2008-04/nlom-gc2040708.php (1412 words)

	MyGenBank Home
		Keywords are parsed from the GenBank KEYWORD lines and features are parsed from the "feature keys" in the feature table.
		Contains the GBlite.pm perl module used for parsing GenBank flat files and may be useful outside this context as well.
		This will process just one GenBank file, which will allow you to determine if your environment is set up correctly before wasting a lot of download and cpu time.
	homepage.mac.com /iankorf/mygenbank.html (1363 words)

	Python GenBank Parser
		GenBank Data Parser is a Python script designed to translate the region of DNA sequence specified in CDS part of each gene into protein sequence.
		It also generates additional files that are designed to assist in GenBank data analysis.
		When the program is done the message is prompted that the modified files have been created.
	cgpdb.ucdavis.edu /GenBankParser (628 words)

	GenBank Database
		GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences.
		GenBank is part of the International Nucleotide Sequence Database Collaboration, which is comprised of the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the National Center for Biotechnology Information.
		Each GenBank entry includes a concise description of the sequence, the scientific name and taxonomy of the source organism, and a table of features that identifies coding regions and other sites of biological significance, such as transcription units, sites of mutations or modifications, and repeats.
	www.psc.edu /general/software/packages/genbank/genbank.html (256 words)

	GCK Tutorial 13: Searching and Importing GenBank
		All GenBank features are converted one-to-one to GCK features using a conversion scheme you can customize.
		This file was downloaded from GenBank and contains several different sequences in the same document.
		GenBank and EMBL are default buttons, but you can also specify a specific internal server by pressing the
	www.textco.com /support/gck-tutorials/gck_tutorial_13.html (1129 words)

	Beginning Perl for Bioinformatics: Chapter 10: GenBank
		GenBank (Genetic Sequence Data Bank) is a rapidly growing international repository of known genetic sequences from a variety of organisms.
		GenBank files have a great deal of information in them in addition to sequence data, including identifiers such as accession numbers and gene names, phylogenetic classification, and references to published literature.
		GenBank libraries are further organized into divisions by the classification of the sequences they contain, either phylogenetically or by sequencing technology.
	oreilly.com /catalog/begperlbio/chapter/ch10.html (7307 words)

	GENBANK Database Summary Sheet
		GenBank (R) (registered trademark of the U.S. Department of Health and Human Services) is a nucleic acid database produced by the National Institute of Health.
		Records in GenBank contain sequences and data such as the GenBank Locus Number, sequence description, source organism, sequence length, and references.
		Nucleic acid sequences displayed in the SEQ field are not searchable in the GenBank File.
	www.cas.org /ONLINE/DBSS/genbankss.html (1012 words)

	About GenBank
		GenBank is developed by the NCBI (National Center for Biotechnology Information, a division of the National Library of Medicine (NLM), the U.S.National Institutes of Health (NIH), in collaboration with EMBL Data Library (UK) and the DNA Data Bank of Japan.
		GenBank is a genetic sequence database, "an annotated collection of all publicly available DNA sequences" of over 55,000 species based on submissions of sequence information from authors.
		Access to GenBank is provided for free by NCBI.There are no restrictions to the number of simultaneous users.
	library.usask.ca:9003 /dbs/gen.html (163 words)

	GenBank -- Benson et al. 35 (Supplement 1): D21 -- Nucleic Acids Research
		GenBank (1) is a comprehensive public database of nucleotide
		GenBank, the EMBL Data Library (2) in Europe, and the
		The sequences and biological annotations in GenBank, and the
	nar.oxfordjournals.org /cgi/content/full/35/suppl_1/D21 (3817 words)

	Microbe Magazine
		GenBank is specifically intended to be an archive of primary sequence data.
		However, they can be distinguished from GenBank records by their accession prefix, which includes an underscore, and a notation in the “comment” field that indicates the RefSeq status.
		TPA bridges the gap between GenBank and RefSeq, permitting authors publishing new experimental evidence to re-annotate sequences in a public database as they think best, even if they were not the primary sequencer or the curator of a model organism database.
	www.asm.org /microbe/index.asp?bid=50523 (1402 words)

	GenBank is a database of nucleotide sequences. (Site not responding. Last check: )
		GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research 2004 Jan 1;32(1):23-6).
		Submissions to GenBank Many journals require submission of sequence information to a database prior to publication so that an accession number may appear in the paper.
		Send it to: update@ncbi.nlm.nih.gov Access to GenBank GenBank is available for searching at NCBI via several methods.
	www.online-prescriptiondrugs.com /article.php?article_id=23 (420 words)

	Submit to GenBank
		GenBank depends on its contributors to help keep the database as comprehensive, current, and accurate as possible.
		Please be aware that it is only necessary to submit the sequence to one database, whichever one is most convenient, without regard for where the sequence may be published.
		GenBank will, upon request, withhold release of new submissions until the paper is published.
	www.biosino.org /pages/genebank.htm (1225 words)

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