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| | Computer Science Course Listing (Site not responding. Last check: 2007-10-24) |
 | | The course will focus on techniques fo rthe design and analysis of data structures and algorithms for sequence-analysis problems, including sequence comparison, sequence matching, longest common substring, longest common subsequence, shortest superstring, motif discovery, phylogeny alignment, sequence based predictions, and heurisitic design. |
 | | We study algorithms and heuristics for computational biology problems including shotgun sequencing, sequencing by hybridization, restriction map and physical map construction, regulatory network inference, and RNA and protein structure inference. |
 | | The course is dominated by the study string problems and algorithms including: shortest superstring hardness and approximations, approximate string matching, exact string matching, string searching, suffix trees and arrays, lowest common ancestor, approximate string matching and edit distance. |
| web.cecs.pdx.edu /~henselmn/course.php?cid=206 (382 words) |
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