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Topic: Rasmol


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In the News (Thu 24 Dec 09)

  
  RasMol V2.7.2.1 README
RasMol version 2.7.0.1 was a technically minor, but operationally critical upgrade to version 2.7.0, correcting a serious error in the selection logic introduced in the process of merging versions to create version 2.7.0.
RasMol version 2.6x1 was an upgrade to RasMol by Arne Mueller to add code to allow listing of information about the chains, groups or atoms in a selection, listing of phi-psi, allow selection by cis angle cutoff, and to provide a POV-Ray version 3 output.
Rasmol version 2.6_CIF(Rev 1) was a minor update to RasMol version 2.6_CIF, which added support for alternate conformer coloring of small molecule CIFs, using _atom_site_disorder_group, recognizes requests for bonds which have neither atom names nor atom numbers, ensures zapping of existing bonds when connect command is used.
www.bernstein-plus-sons.com /software/RasMol_2.7.2.1/README.html   (3335 words)

  
 RasMol V2.7.3 Manual
RasMol is a molecular graphics program intended for the visualisation of proteins, nucleic acids and small molecules.
RasMol may be instructed not to display a graphics window by using the command line option '-nodisplay'.
RasMol imposes limits on the size of the display window such that the window must be large enough to display the menu and scroll bars and yet small enough to fit on a single screen.
www.openrasmol.org /doc/rasmol.html   (13158 words)

  
 RasMol Home Page Contents
If you are new to RasMol, and if you are using Windows or Macintosh, we strongly recommend that you start with Protein Explorer instead of RasMol.
RasMol users should be aware that the documentation here (www.umass.edu/microbio/rasmol) pertains to RasMol version 2.6.
RasMol users should please visit OpenRasMol.Org to find out the latest offerings there, which will not be listed here.
www.umass.edu /microbio/rasmol/index2.htm   (486 words)

  
 RasMol Home Page
Chime, freeware from MDL, and derived from RasMol.
Alternatively, RasMol freeware works on all platforms (including older Windows and Macintosh systems).
It is much less powerful than Protein Explorer (see the snapshots of Protein Explorer in action and the comparison with RasMol).
www.umass.edu /microbio/rasmol   (366 words)

  
 MW Software - RasMol for RISC OS
RasMol reads in molecular co-ordinate files in a number of formats and interactively displays the molecule on the screen in a variety of colour schemes and representations.
RasMol can read a prepared list of commands from a `script' file (or via interprocess communication) to allow a given image or viewpoint to be restored quickly.
RasMol can also create a script file containing the commands required to regenerate the current image.
www.mw-software.com /software/rasmol/rasmol.html   (550 words)

  
 Display of Molecular Structures -- RasMol
One powerful feature of Rasmol is that it allows the user to display different parts of the molecule in different formats, such as spacefilling, alpha-carbon backbone trace, or ribbons indicating alpha helix and beta sheet; an example is shown in the image at top left.
One of the difficult aspects of RasMol is knowing how to use the "Select" commands; here is a tutorial that is a big help.
Copy (don't move) RasMol into that folder; its name is 'RasWin v 2.6' or perhaps rw32b2a.exe (you need a copy of RasMol in the same folder, so that the program will be able to find the files).
www.biochem.arizona.edu /classes/bioc568/rasmletc.htm   (2106 words)

  
 RasMol V2.7.1.1 Manual
RasMol 2.7.1.1 is an interim release for testing of the integration of multilingual capabilities into RasMol.
By default the width of the ribbon is taken from the secondary structure of the protein or a constant value of 720 for nucleic acids (which produces a ribbon 2.88 Ångstroms wide).
RasMol atom expressions uniquely identify an arbitrary group of atoms within a molecule.
web.mit.edu /rasmol_v2.7.1/doc/rasmol.html   (15371 words)

  
 RasMol V2.6 Molecular Visualisation Program
By default the width of the ribbon is taken from the secondary structure of the protein or a constant value of 720 (2.88 Angstroms) for nucleic acids.
A RasMol script file may contain a further script command up to a maximum "depth" of 10, allowing compilicated sequences of actions to be executed.
By default the width of the ribbon is taken from the secondary structure of the protein or a constant value of 720 for nucleic acids (which produces a ribbon 2.88 Angstroms wide).
www.chemie.fu-berlin.de /chemnet/use/rasmol.html   (7988 words)

  
 MBN Help: Rasmol help
The main purpose of RasMol Quick Start is to guide you through the large number of pages at the RasMol Home Page.
A copy of RasMol (Win 32 version for Win 95)is provided on the CD Rom of "The Molecular Biology Notebook" and has been installed on your machine.
Note than when the RasMol main window is on view, it is still possible to type commands in the RasMol command window.
www.rothamsted.bbsrc.ac.uk /notebook/courses/guide/help/rasmol.htm   (550 words)

  
 RasMol
RasMol is a program that allows you to view molecular structures on the computer screen, and to manipulate them.
RasMol was written by Roger Sayle, now at Glaxo, and is available free, for Windows and Mac computers (and others).
Berkeley RasMol offers three variations of the basic rotation command, one of which allows you to alter the conformation of the molecule by rotating part of it around a particular bond.
www.geocities.com /Athens/Thebes/5118/rasmol.htm   (6316 words)

  
 RasMol V2.7.3 README
Changes were made in August 2000 for RasMol version 2.7.2, January 2001 for RasMol version 2.7.1.1 and April 2001 for RasMol version 2.7.2.1 and February 2005 for RasMol version 2.7.3.
This release is based on RasMol 2.7.2.1.1, the final reference release for the 2.7.2 series.
If you previously reported a bug in RasMol 2.7.1 which still exists in 2.7.2, you may resubmit your report, but there is no need to do so.
www.bernstein-plus-sons.com /software/rasmol   (2385 words)

  
 Information on RasMol   (Site not responding. Last check: 2007-11-01)
Available for Windows, Macintosh, and UNIX platforms, RasMol is a free, interactive molecular-graphics viewer.
These are free software programs and are available on the ACN (Academic Computing Network) Macintosh network or from Aladdin Systems.
Create New Type of Navigator Application for RasMol: In category section on the dialog box’s left side, use the mouse to click on the word "Application" under the category "Navigator." Use the mouse to click the "New" button.
www.chemistry.wustl.edu /EduDev/rasdir.html   (592 words)

  
 Rasmol
Rasmol is said to be the most popular 3D molecular graphics viewer in the world.
Molecule data is stored in pdb (protein data bank) files for viewing in Rasmol.
Rasmol has a site of it's own with further details and a vast array of resources - but somewhat University oriented.
ourworld.compuserve.com /homepages/RayLec/rasmol.htm   (410 words)

  
 NDB | Tools | Base Pair Viewer Help
Download the version of RasMol which is compatible with your operating system (RasWin.exe for Windows, RasMac for Macintosh).
Once installed, make sure your Web browser is configured to open RasMol at the appropriate times (that is, set up your browser to recognize that certain file types with certain file extensions, also known as a MIME type, should be loaded into RasMol and displayed.).
Configuring RasMol for display of a PDB file and execution of a short script: This command not only starts RasMol, but also instructs RasMol to read a file of commands which effect how the display looks.
ndbserver.rutgers.edu /services/help/help-graphics.html   (485 words)

  
 RasTop Home Page
RasTop is a molecular visualization software adapted from the program RasMol initially developed by Roger Sayle.
A few systems are missing an updated version of the mfc42.dll file which is also available, but requires separate installation.
Beside the interface, new rendering capabilities were added to RasMol code: back clipping, 32-bit output under Windows, centering command either on current selection or to the origin, variation of depthcue in slab mode, and ShadePower coloring feature.
www.geneinfinity.org /rastop   (576 words)

  
 Search Results for rasmol
Source code for RasMol, in the C language, is available for those who wish to modify the program, recompile and link an executable program binary.
RasMol is famous for its beautiful molecular representations a menu interface which invites the user to step in and explore the molecular structure
The RasMol email list is for discussion of RasMol, Chime, Swiss-PdbViewer, WebLab, and other molecular visualization software (especially of the free variety), educational uses, newly available or enhanced accessories, tutorials or "movie" scripts, technical questions about the software, announcements of new web pages involving molecular visualization (such as university class web pages), and...
storm.prohosting.com /bportal/bioinformatica/rasmol.htm   (2476 words)

  
 Rasmol Downloading instructions
There are a couple programs to choose from within RasMol all of which are very useful.
The original RasMol manual was created by Roger Sayle, and version 2.7 is the most recent version that has been made available.
Create a folder or determine under which folder on your hard drive (c drive) to place the program.
www.colorado.edu /chemistry/bioinfo/RasmolDownloading.htm   (226 words)

  
 Download RasMol
The original RasMol program was developed by Roger Sayle at GlaxoWellcome.
For more information about Rasmol and for links to other Rasmol resources, have a look at the Rasmol/Chime Home Page set up by Erik Martz at the University of Massachusetts.
This is a compressed file which unzips into a RasWin directory with the 32-bit RasWin v2.6 Beta-2a application (rw32b2a.exe) along with two help files (rasmol.hlp and raswin.hlp) needed by the application.
wbiomed.curtin.edu.au /teach/biochem/help/download.html   (733 words)

  
 Molecule Viewing Information   (Site not responding. Last check: 2007-11-01)
There is a revised version of RasMol, for Mac's and PC's, at the University of California, Berkeley RasMol site.
There is a plugin version of Rasmol, called "Chime," which is available if your web browser supports plugins and if you prefer to use the program in that way.
Chime, for the Mac, and both 16 bit and 32 bit PC versions (along with instructions on how to install them), are available at Chemscape.
www.chem.arizona.edu /~salzmanr/viewinfo.html   (397 words)

  
 RasMol Tools (UMass Amherst)
RasMol Tools for Visualizing Immunoglobulin, MHC, and Other Molecules
Download RasMol (available for Macintosh as well as Windows) from the RasMol Home Page, where you can also get the Microbiology 540 Class "Movie" Scripts for RasMol (get the ones on antibody and MHC).
RasMol Quick Start is a guide to exploring molecules for beginners.
www.bio.umass.edu /immunology/5rasmol.html   (156 words)

  
 SWBIC - Rasmol   (Site not responding. Last check: 2007-11-01)
[Bernstein+Sons] New versions of RasMol, for molecular display and manipulation, with new manual, languages other than English.
RasTop is a molecular visualization program for Windows platforms adapted from the program RasMol.
It wraps a user-friendly graphical interface around the RasMol molecular engine.
www.swbic.org /links/1.13.3.php   (86 words)

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