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Topic: Sequence space

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	Main sequence - Space Wiki - a Wikia wiki
		The main sequence of the Hertzsprung-Russell diagram is the curve along which the majority of stars are located.
		This line is so pronounced because both the spectral type and the luminosity depend only on a star's mass (to zeroth order) as long as it is fusing hydrogen—and that is what almost all stars spend most of their "active" life doing.
		There are many reasons for this fuzziness, the most important one still being observational uncertainties which mainly affect the distance of the star in question but range all the way to unresolved binary stars.
	space.wikia.com /wiki/Main_sequence (585 words)

	Sequence space - Wikipedia, the free encyclopedia
		In functional analysis and related areas of mathematics, a sequence space is an important class of function space.
		A sequence space equipped with the topology of pointwise convergence becomes a special kind of Fréchet space called FK-space.
		The space of convergent sequences c consisting of all convergent sequences
	en.wikipedia.org /wiki/Sequence_space (200 words)

	Advanced Biomedical Computing Center:SeqSpace infomation
		Sequence Space implements a method of clustering aligned protein sequences based upon the algorithm developed by G. Casari, C. Sander and A. Valencia.
		Each sequence is converted into a vector in "Sequence Space", projection of which onto a lower dimensional space allows 2- or 3-dimensional viewing of the resulting clusters.
		By projecting the sequence residues into the same space, groups of residues specific for the clusters are revealed, allowing the identification of residues that are predicted to be directly involved in protein function.
	www.abcc.ncifcrf.gov /app/htdocs/appdb/appinfo.php?appname=SeqSpace (159 words)

	Space Cowboys: Cinephiles Movie Review
		Space Cowboys revisits its embittered protagonist, the retired Air Force test pilot Frank Corvin (Clint Eastwood), forty years after a humiliating episode where he is replaced by a monkey for a 1958 NASA mission to space.
		Space Cowboys' initial introduction of its protagonist (in the brief fl and white sequence which includes the humiliating incident with the monkey), offers a convenient setup which allows the ellipsis of forty years to hyperbolize the four characters' emotional states and to justify their subsequent actions.
		Space Cowboys subtly and effectively creates an analogy between the characters and the troublesome "guidance system": while the men's present occupations are portrayed as rather useless, the guidance system's design is described as old and obsolete, yet neither the men nor the system are entirely expendable.
	www.cinephiles.net /Space_Cowboys/Film-Synopsis.html (425 words)

	Space Explorer (Site not responding. Last check: 2007-10-11)
		Its means of representing such spaces is described in more detail elsewhere; this document is a very preliminary introduction to the user interface and some of the early capability of the program.
		A binary space is shown in Figure 2, again with points colored according to their Hamming distance from the master sequence.
		The first concerns the flow in sequence space of populations of predators and prey in a simple model; the second, population movement in a simple NK model.
	www.smfr.org /work/sfi/spaceexplorer.html (414 words)

	Protein topology and stability define the space of allowed sequences -- Koehl and Levitt 99 (3): 1280 -- Proceedings of ...
		Sequences in a multiple sequence alignment are weighted to reflect their similarities with other sequences in the alignment.
		A two-dimensional projection of the sequence space spanned by these sequences at the beginning of the optimization is shown in A and B, whereas C and D illustrate the size of this sequence space at then end of the optimization, after 80 cycles of SSA.
		The entropy in sequence space of each residue of 1ctf and 2hsp is plotted against the position of the residue in the sequence of the protein.
	www.pnas.org /cgi/content/full/99/3/1280 (4202 words)

	Biomedical Initiative - (Site not responding. Last check: 2007-10-11)
		Sequences in the same cluster share a similar pattern of substitutions and this is presumed to reflect some common biochemical or physiological property or function.
		Note that in the Sequence Space 2D Proteins window the color of one of the small boxes (lower right of the window) is turned from fl to red.
		A sequence can be reliably assigned to a group if the score for the group is positive while the scores for other groups are negative and there is a substantial difference between the highest two scores.
	www.psc.edu /biomed/training/exercises/revised/group.html (3179 words)

	Banach space Summary
		This means that a Banach space is a vector space V over the real or complex numbers with a norm ‖·‖ such that every Cauchy sequence (with respect to the metric d(x, y) = ‖x − y‖) in V has a limit in V.
		The space V* (which may be called the algebraic dual space to distinguish it from V') also induces a weak topology which is finer than that induced by the continuous dual since V′⊆V*.
		Several important spaces in functional analysis, for instance the space of all infinitely often differentiable functions R → R or the space of all distributions on R, are complete but are not normed vector spaces and hence not Banach spaces.
	www.bookrags.com /Banach_space (2223 words)

	Crystal Space: Sequence Manager (Site not responding. Last check: 2007-10-11)
		Using the sequence manager it is possible to define specific events that trigger on certain conditions.
		This also means that if you fire another sequence then that sequence will also get fired at the same time and depending on the relative timing of the operations some of those operations might happen at the same time.
		What this basically means is that all operations of that sequence are scheduled in the engine sequence manager at the appropriate times relative to the current time.
	www.crystalspace3d.org /docs/online/manual-0.98/cs_194.html (1639 words)

	3.3 Sequence Numbers
		For sequence number purposes, the SYN is considered to occur before the first actual data octet of the segment in which it occurs, while the FIN is considered to occur after the last actual data octet in a segment in which it occurs.
		In the absence of knowledge about the sequence numbers used on a particular connection, the TCP specification recommends that the source delay for MSL seconds before emitting segments on the connection, to allow time for segments from the earlier connection incarnation to drain from the system.
		Suppose, for example, that a connection is opened starting with sequence number S. Suppose that this connection is not used much and that eventually the initial sequence number function (ISN(t)) takes on a value equal to the sequence number, say S1, of the last segment sent by this TCP on a particular connection.
	www.freesoft.org /CIE/RFC/793/21.htm (1996 words)

	NKS 2006 Conference & Minicourse: RNA and NKS
		Furthermore, I have shown that sequence space is structurally and functionally redundant and that sequences having a particular function are not randomly distributed in sequence space, but rather, belong to large networks interconnected by one- or two-step mutations.
		Because neutral networks for different functions are interwoven throughout sequence space, arbitrary sequences are guaranteed to be near in sequence space to many (all?) functional sequences and that one- or two-step mutations can sometimes transform a functional RNA from one network, into a radically new fold and function as part of another neutral network.
		Many important experiments remain to be done, including a truly systematic and comprehensive sampling of RNA sequence space that would require the synthesis and analysis of 35,000 arbitrary RNA sequences and cost $100M.
	www.wolframscience.com /conference/2006/presentations/schults.html (432 words)

	Hilbert space Summary
		In mathematics, a Hilbert space is a generalization of Euclidean space that is not restricted to finite dimensions.
		The Hilbert space of plane waves and bound states commonly used in quantum mechanics is known more formally as the rigged Hilbert space.
		We call H a Hilbert space if it is complete with respect to this norm, that is if every Cauchy sequence converges to an element in the space.
	www.bookrags.com /Hilbert_space (2249 words)

	The Panda's Thumb: Icons of ID: Avida
		Genotype space (sequence space) is fully determined by genetic operators such as mutation, recombination, duplication, genome rearrangement and many others.
		The distribution of neutral genotypes (sequences that fold into the same structure) is approximately random in sequence space.
		Sequences at the intersection of the compatible sets of two neutral networks upon the same sequence space were found to be of actual interest since they can simultaneously carry the properties of the different RNA folds.
	www.pandasthumb.org /archives/2004/07/icons_of_id_avi.html (1319 words)

	PassPorter.com -- Mission: SPACE - Launch Sequence Commencing
		The story of Mission: SPACE takes us about forty years into the future, when Disney and space program experts hope that space flight will be routine for ordinary citizens.
		Space Race pits two teams of 16 (12 ground controllers and four crew members) in a race to Mars where time and teamwork count.
		Space Base is a crawl-around exploration environment for those too small to launch.
	www.passporter.com /articles/missionspace.htm (1594 words)

	Thoroughly sampling sequence space: Large-scale protein design of structural ensembles -- Larson et al. 11 (12): 2804 ...
		The distribution of sequence entropies for the designed sequences is plotted in fl, with the sequence entropy from the allowed rotamers in gray.
		Identity to the native target sequence was calculated first for the set of sequences designed using only a single fixed target backbone as a target template (all residues: fl dashed line; buried residues: gray dashed line).
		space is not biased by an evolutionary constraints.
	www.proteinscience.org /cgi/content/full/11/12/2804 (5502 words)

	The BioInformer nr. 3, 1998 -- Sequence Space Viewer
		Ordination, as described by Higgins [2], "is used to take a set of objects, initially arranged in a high-dimensional space and represent these in a small number of dimensions, while preserving the inter-object distances as much as possible".
		There are many ways in which we could define sequence space, and the advantage of the method used here if that it is based on protein sequence alone.
		As the input data is a set of aligned sequences, it is reasonable to assume that they will be clustered somewhere in sequence space.
	www.riethoven.org /BioInformer/newsletter/archives/3/seqspace.html (1165 words)

	BioMed Central \| Full text \| A functional hierarchical organization of the protein sequence space
		Classifying the entire protein space into families serves not only as a method for large-scale protein annotations but also to support functional and structural genomic initiatives [14].
		The sequence similarity between every pair of protein sequences is taken as the BLAST [20] E-value between a given pair of proteins.
		Therefore, the LT of a cluster reflects its remoteness from the clusters in its "vicinity" in protein sequence space.
	www.biomedcentral.com /1471-2105/5/196 (4591 words)

	NASA - International Space Station
		Completing the International Space Station, explains NASA Administrator Mike Griffin, is an integral part of the Vision for Space Exploration.
		International Space Station crew members moved Pressurized Mating Adapter-3 from the left side of the Unity node to the bottom to prepare the station for future growth.
		At the end of her six-month stay aboard the International Space Station, astronaut Suni Williams shares her thoughts on exploration and sends heartfelt thanks to all the people that make the journey possible.
	www.nasa.gov /mission_pages/station/main (605 words)

	Computational Biology Center of MSKCC
		Copy the sequence into the sequence box in the web form (remove extra punctuation and accompanying text, but extra whitespace is fine.)
		The main Sequence Space window will display the names and desccriptions of the proteins in your protein family.
		When a residue is selected, every occurrence of that same residue at that same position in any sequence is selected.
	cbio.mskcc.org /seqspace/tutorial.html (566 words)

	Applytexas - Submit Essay
		If your essay does not display properly, the problem is either that your essay is too long (maximum length is 120 lines), or you are using an obsolete or non-standard browser.
		Describe an aesthetic experience that you have had that was brought about by an architectural space or sequence of spaces, either interior or exterior.
		Try to link the nature of the experience to the nature of the space.
	www.utexas.edu /student/research/surveys/bobby/tca/gen/c_ess2.html (423 words)

	The design space for sequence data structures
		A linked list is usually used to implement the sequence of descriptors (buffer pointers) and this is generally a good method because of the ease of inserting and deleting descriptors (which are frequent operations).
		Another generalization would be to use two levels of recursion, that is, to use one of the recursive sequence data structures to implement the sequence of descriptors.
		The recursive methods are beneficial when the sequences are quite large so we might use a two-level recursive method if the number of descriptors was quite large.
	www.cs.unm.edu /~crowley/papers/sds/node17.html (766 words)

	Probability Density Metrics
		However, sequences in the bio sequence dataset are not always globally related.
		LDR is a good candidate for precise query among large-scale high-dimensional sequence dataset.
		31] built a global view of protein sequence space, rather than to enable fast search for similar sequence.In ],it presents an approach to search genetic DNA sequences using an adaption of suffix tree data structure.
	people.cs.uchicago.edu /~jliu/reference/node5.html (845 words)

	BBC NEWS \| Science/Nature \| Ariane tests space truck sequence
		The Ariane rocket has used a commercial satellite launch to test the engine sequence needed to loft Europe's forthcoming space truck, the ATV.
		A re-ignition sequence will be required on the launch that hurls the ATV on a path to the space station in January.
		At almost 20 tonnes, the ATV (Automated Transfer Vehicle) will be the biggest spacecraft Europe has ever flown; and the European Space Agency (Esa) wants to be sure Ariane is up to the task.
	news.bbc.co.uk /go/rss/-/1/hi/sci/tech/7030728.stm (552 words)

	Abundance of correctly folded RNA motifs in sequence space, calculated on computational grids -- Knight et al. 33 (18): ...
		For example, a sequence composed entirely of G and C would lie at 1.0 on Chargaff's axis, a sequence composed entirely of A and U would lie at 0.0, and a sequence with equal amounts of G + C and A + U would lie at 0.5.
		Probability of finding the required sequence elements (a and b), probability of folding correctly given that the required sequence elements were present (c and d), and overall probability of having the required sequence elements and folding correctly (e and f).
		Sequence length does not affect the region of composition space in which each motif is most likely to be found, although there are some variation due to sampling effects.
	nar.oxfordjournals.org /cgi/content/full/33/18/5924 (6785 words)

	The Golf Swing Sequence - Article Space (Site not responding. Last check: 2007-10-11)
		Many people say that there are 3 stages to the golf swing sequence: the backswing, the down swing and the follow through.
		In the next stage of the golf swing sequence the shoulders, arms and club initially all start moving as one, in the backswing.
		An important point to note is that throughout the swing the head should remain still and focused on the ball.
	www.article-space.com /Article/The-Golf-Swing-Sequence/30134 (519 words)

	PlanetMath: Cauchy sequence
		is a Cauchy sequence if and only if for every neighborhood
		Cross-references: metric, induced, topology, equivalent, neighborhood, topological vector space, natural number, real number, metric space, sequence
		This is version 5 of Cauchy sequence, born on 2001-10-27, modified 2005-11-30.
	planetmath.org /encyclopedia/CauchySequence.html (93 words)

	Functional tuning of a salvaged green fluorescent protein variant with a new sequence space by directed evolution -- ...
		Functional tuning of a salvaged green fluorescent protein variant with a new sequence space by directed evolution -- Nam et al.
		Functional tuning of a salvaged green fluorescent protein variant with a new sequence space by directed evolution
		with a new sequence space when GFP was employed as a model protein.
	peds.oxfordjournals.org /cgi/content/full/16/12/1099 (4082 words)

	Structural similarity to link sequence space: New potential superfamilies and implications for structural genomics -- ...
		Structural similarity to link sequence space: New potential superfamilies and implications for structural genomics -- Aloy et al.
		Structural similarity to link sequence space: New potential superfamilies and implications for structural genomics
		sequence similarity after structure-based alignment is one of
	www.proteinscience.org /cgi/content/abstract/11/5/1101 (333 words)

	NASA - Missions - Highlights
		Fifty years ago the world's first artificial satellite was launched, triggering the space race between the U.S. and the Soviet Union.
		NASA and the Russian Federal Space Agency Roscosmos have agreed to fly two Russian scientific instruments on NASA spacecraft that will conduct unprecedented robotic missions to the moon and Mars.
		Assembly animation depicting piece by piece construction of the International Space Station from beginning to proposed completion (Master# 721825, August 2006).
	www.nasa.gov /missions/highlights (389 words)

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