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	Superfamily - Biography
		Superfamily is a seven-piece rock band who is proud to say their roots lie in Moss - a small and foul smelling town in the South East of Norway.
		Superfamily had become a complete rock band, but their stage show and lyrics were either (or both) to stupid or too smart to fit nicely into one genre.
		Superfamily has now signed a record deal with Propeller Recordings (signed in a bathroom at the Faculty of Social Sciences, University of Oslo), and their first EP is scheduled for release in the autumn of 2004, and the first album in September 2005.
	www.superfamily.no /biography.htm (509 words)

	Superfamily
		Superfamily is playing live on the radio at Nrk's famous program p3sessions.
		Superfamily is supporting the New York based band Trachtenburg Family Slideshow Players at the student festival Studio '04 in Oslo on friday the 27th of August.
		Superfamily is currently recording their upcoming EP at Propeller Studios, and will not be able to give you as many of the shows you love for a period of time.
	www.superfamily.no (1764 words)

	help file
		Superfamily assignment is initially done using the HMMPFAM with liberal E-value.
		To test structural compatibility,representive member of the superfamily are then aligned and superposed using the uploaded structure to test structural compatibility.
		Superfamily assignment is done using the HMMPFAM with the E-value of 0.1.
	caps.ncbs.res.in /campass/pass/help.html (1157 words)

	Superfamily
		This server does not attempt (at present) to distinguish between families within superfamilies, but is able to detect the broader and more distant relationships at the superfamily level.
		Each sequence may well hit a superfamily more than once as there are several overlapping models for each superfamily, however it is the hit to the superfamily which is meaningful.
		You may view sequences aligned to the models which represent a view of the superfamily although it may be biased towards the seed.
	supfam.mrc-lmb.cam.ac.uk /SUPERFAMILY (651 words)

	[No title] (Site not responding. Last check: 2007-10-21)
		Motif regions on the scorpion OSK1 Toxin, from the Scorpion toxin-like superfamily (SCOP superfamily 7.3.7).
		In the figure, we show an example from the homeodomain-like protein superfamily, the MarA protein from E. Coli, with functional and structural annotations of the HTH motif regions.
		The yellow regions are the motif regions; the blue and brown strands are DNA double helices; the two protein domains are shown in fl and pink respectively.
	www.cs.columbia.edu /compbio/profile-kernel/families.html (640 words)

	Cadherin superfamily genes: functions, genomic organization, and neurologic diversity -- Yagi and Takeichi 14 (10): ... (Site not responding. Last check: 2007-10-21)
		A large number of cadherin superfamily genes have been identified to date, and most of them seem to be expressed in the CNS.
		Moreover, a subfamily of the cadherin superfamily, CNR
		Many of the cadherin superfamily genes have been mapped to specific human and mouse chromosomes (Table 2).
	www.genesdev.org /cgi/content/full/14/10/1169 (5291 words)

	The ‘30K’ superfamily of viral movement proteins -- Melcher 81 (1): 257 -- Journal of General Virology
		Significance scores for the alignment of sequences of a family with the 17 consensus sequences of the other families are given to the right of the predictions.
		Scores from a structural correlation matrix were summed over sliding 10 residue windows in a comparison of the multiple sequence alignment of the superfamily against itself (upper curve) and against the same alignment offset by one residue (lower curve).
		Berti, P. and Storer, A. Alignment/phylogeny of the papain superfamily of cysteine proteases.
	vir.sgmjournals.org /cgi/content/full/81/1/257 (5244 words)

	Mechanistic Diversity in a Metalloenzyme Superfamily (Site not responding. Last check: 2007-10-21)
		It is now appreciated that the relationships of proteins, particularly enzymes, within a protein superfamily can be understood not only in terms of their sequence similarities and three-dimensional structures but also by chemical threads that relate their functional attributes.
		The mechanistic ties among superfamily members can often be traced to a common transition state for the rate-limiting step of the reactions being catalyzed.
		The remarkable access to mechanism space that is provided by the VOC superfamily appears to derive from a simple, pseudosymmetric structural fold that maximizes the catalytic versatility of the metal center.
	pubs.acs.org /cgi-bin/abstract.cgi/bichaw/2000/39/i45/abs/bi001814v.html (228 words)

	Differential TGFBeta Superfamily Gene Expression in Dental Cells (Site not responding. Last check: 2007-10-21)
		superfamily members and their receptors between odontoblast and ameloblast cells.
		superfamily, their receptors and the housekeeping gene, cyclophilin A (control).
		In addition, growth curves were determined for each of the cell lines by performing cell counts at days 0, 1, 2, 3, and 4 using a Coulter counter.
	iadr.confex.com /iadr/2004Hawaii/techprogram/abstract_48125.htm (344 words)

	Gendis.html (Site not responding. Last check: 2007-10-21)
		Similar alignments of the superfamily members are provided in the genome level, thus creating a sequence platform for cross genome comparison at the superfamily level.
		Alignment of the member proteins belonging to a given structural superfamily and a particular genome.
		Overlap score between two genomes is calculated by dividing the number of common superfamilies by the number of unique superfamiles present in both genomes.
	caps.ncbs.res.in /gendis/help.html (1374 words)

	The Origin and Function of the Pituitary Adenylate Cyclase-Activating Polypeptide (PACAP)/Glucagon Superfamily -- ...
		The PACAP/glucagon superfamily members that are present in humans are arranged by length.
		The genes that have been isolated and sequenced from invertebrates (tunicate, a protochordate) and vertebrates are shown for the PACAP/glucagon superfamily members.
		superfamily members in that gt/ag is present at the start/end of
	edrv.endojournals.org /cgi/content/full/21/6/619 (11254 words)

	The amino acid/polyamine/organocation (APC) superfamily of transporters specific for amino acids, polyamines and ...
		Phylogenetic tree of the entire APC superfamily, showing segregation of the proteins into the 10 clusters that define the 10 constituent families.
		Average hydropathy profiles for the proteins that comprise each of the 10 families of the APC superfamily.
		Functional sensitivity of polar surfaces on transmembrane helix 8 and cytoplasmic loop 8–9 of the Escherichia coli GABA (4-aminobutyrate) transporter encoded by gabP: mutagenic analysis of a consensus amphipathic region found in transporters from bacteria to mammals.
	mic.sgmjournals.org /cgi/content/full/146/8/1797 (5736 words)

	Gastropods
		Superfamily Patellacea (Docoglossa): Limpets that lack a hole or notch in their shells.
		Superfamily Rissocea: A large grouping of small conical marine, freshwater and terrestrial snails.
		Superfamily Strombacea: Predominantly large mollusks with heavy shells with flared lips, siphonal canals.
	www.wetwebmedia.com /gastropo.htm (1123 words)

	Propeller Recordings
		Superfamily will be performing live at P3Sessions, Oct 4 6pm.
		Superfamily's debut album "Back in Paris" (PRR04) is now released in Norway.
		Propeller Recordings are proud to announce that we have secured a deal with the well respected UK-based label The Leaf Label Ltd., which means Hanne Hukkelberg's music will finally be brought out to a worldwide audience.
	www.propellerrecordings.no (247 words)

	Predatory Wasps - Superfamily VESPOIDEA and SPHECOIDEA (Site not responding. Last check: 2007-10-21)
		Most wasp species are solitary, but some of them, such as the paper wasps, form colonies.
		Although we call this two Superfamilies as Predatory Wasps, some of them are parasitic.
		The sting is a modified ovipositor which injects venom paralyses but not kill the host.
	www.geocities.com /brisbane_wasps/StingingWasps.htm (415 words)

	SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome ...
		SUPERFAMILY: HMMs representing all proteins of known structure.
		Each domain covers a different region of the query sequence and may be classified in a different SCOP superfamily with a different score.
		The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity
	nar.oxfordjournals.org /cgi/content/full/30/1/268 (1941 words)

	Genetic Analysis of the Mammalian Transforming Growth Factor-{beta} Superfamily -- Chang et al. 23 (6): 787 -- ...
		superfamily with highest homology to each other (183).
		Several TGF-ß superfamily members participate at various stages and, in some cases, are restricted to specific cell populations (e.g.
		Skeletal patterning, differentiation, and function are all affected by members of the TGF-ß superfamily, their receptors, and binding proteins.
	edrv.endojournals.org /cgi/content/full/23/6/787 (9689 words)

	The SUPERFAMILY database in 2004: additions and improvements -- Madera et al. 32 (Supplement 1): 235 -- Nucleic Acids ...
		Nodes represent superfamilies labelled according to their SCOP (3) classification (see below for legend), edges indicate superfamilies that occur next to each other in domain architectures, and arrows show the N-to-C order.
		Node size and edge thickness are proportional to the logarithm of the number of proteins.
		The superfamilies shown in the figure are: a.4.1, homeodomain-like; a.4.2, Methylated DNA–protein cysteine methyltransferase, C-terminal domain; a.60.7, 5'–3' exonuclease, C-terminal subdomain; b.82.4, regulatory protein AraC; c.35.1, phosphosugar isomerase; c.53.1, resolvase-like; c.55.3, ribonuclease H-like; c.55.7, methylated DNA–protein cysteine methyltransferase domain; d.58.40,
	nar.oxfordjournals.org /cgi/content/full/32/suppl_1/D235 (2499 words)

	Computational studies of the Thioredoxin Superfamily (Site not responding. Last check: 2007-10-21)
		We present a method for the prediction of pKa and redox potentials in the thioredoxin superfamily.
		The CXXC motif of this superfamily is essential for the catalysis of redox reactions and exhibits extensive variation of redox equilibria.
		A pKa spectrum across members of the superfamily is presented.
	www.iscb.org /ismb2004/posters/E.MoutevelisATpostgrad.umist.ac.uk_521.html (194 words)

	The Transforming Growth Factor-{beta} Superfamily Cytokine Macrophage Inhibitory Cytokine-1 Is Present in High ...
		The Transforming Growth Factor-{beta} Superfamily Cytokine Macrophage Inhibitory Cytokine-1 Is Present in High Concentrations in the Serum of Pregnant Women -- Moore et al.
		The Transforming Growth Factor-ß; Superfamily Cytokine Macrophage Inhibitory Cytokine-1 Is Present in High Concentrations in the Serum of Pregnant Women
		2000 Expression of a TGF-ß superfamily protein, macrophage inhibitory cytokine-1, in the yeast Pichia pastoris.
	jcem.endojournals.org /cgi/content/full/85/12/4781 (4706 words)

	The drug/metabolite transporter superfamily -- Jack et al. 268 (13): 3620 -- FEBS Journal (Site not responding. Last check: 2007-10-21)
		presents a summary of the 14 families of the DMT superfamily.
		Saier, M.H. Jr (1996) Phylogenetic approaches to the identification and characterization of protein families and superfamilies.
		Saier, M.H. Jr (1998) Molecular phylogeny as a basis for the classification of transport proteins from bacteria, archaea and eukarya.
	content.febsjournal.org /cgi/content/full/268/13/3620 (6885 words)

	Specificity, diversity, and regulation in TGF-{beta} superfamily signaling -- PIEK et al. 13 (15): 2105 -- The FASEB ... (Site not responding. Last check: 2007-10-21)
		The Smad family of intracellular signal transducers for TGF-ß superfamily proteins.
		Smad7 appears to be a general inhibitor of TGF-ß superfamily signaling whereas Smad6 preferentially inhibits BMP-induced responses.
		Kingsley, D. (1994) The TGF-ß superfamily: new members, new receptors, and new genetic tests of function in different organisms.
	www.fasebj.org /cgi/content/full/13/15/2105 (7084 words)

	AKR Superfamily (Site not responding. Last check: 2007-10-21)
		Welcome to the Aldo-Keto Reductase (AKR) Superfamily homepage.
		This page has been established as a database of existing and potential members of the Aldo-Keto Reductase Superfamily and was last updated on March 14, 2003.
		David Hyndman and Trevor M. Penning with the help of Valdi Heredia, David Bauman, Gail Vogel, Natan Elman, and Alethea Pena.
	www.med.upenn.edu /akr (55 words)

	Smads and early developmental signaling by the TGFbeta superfamily -- Whitman 12 (16): 2445 -- Genes and Development
		superfamily signals is the variety of effects they can evoke, contingent on the developmental
		superfamily factors is the binding of ligand to transmembrane receptors.
		superfamily ligands and of Smads in embryos is consistent with multiple morphogenic
	www.genesdev.org /cgi/content/full/12/16/2445 (8284 words)

	Bees - Superfamily APOIDEA (Site not responding. Last check: 2007-10-21)
		[ Parasitic Wasps - Superfamily ICHNEUMONOIDEA and CHALCIDOIDEA ]
		[ Predatory Wasps - Superfamily VESPOIDEA and SPHECOIDEA ]
		Download large pictures in our Wallpaper web page.
	www.geocities.com /brisbane_wasps/Bees.htm (509 words)

	InterPro: IPR000286 Histone deacetylase superfamily
		Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily [ 1 ].
		Leipe D.D. Landsman D. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are members of an ancient protein superfamily.
		These databases describe the structural architecture of proteins, placing them within hierarchical classification schemes; InterPro entries are mapped to the 'Homologous Superfamily' level of CATH and to the 'Superfamily' level of SCOP.
	www.ebi.ac.uk /interpro/IEntry?ac=IPR000286 (2658 words)

	Parachlamydia sp. UWE25
		families in SCOP superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors
		families in SCOP superfamily C-terminal effector domain of the bipartite response regulators
		families in SCOP superfamily N-terminal domain of the delta subunit of the F1F0-ATP synthase
	supfam.mrc-lmb.cam.ac.uk /SUPERFAMILY/cgi-bin/gen_list.cgi?genome=p0 (1891 words)

	Cystine knot superfamily (Site not responding. Last check: 2007-10-21)
		Clearly there is scope for both sequence and structural variation away from the knot at the core of the molecules.
		Crystal structure of transforming growth factor-beta2: an unusual fold for the superfamily.
		A structural superfamily of growth-factors containing a cystine knot motif.
	people.cryst.bbk.ac.uk /~ubcg09j/neurotrophins/cysknot.html (1159 words)

	The Insulin-Like Growth Factor-Binding Protein (IGFBP) Superfamily -- Hwa et al. 20 (6): 761 -- Endocrine Reviews
		with the IGFBPs led to the proposal of a new superfamily, an
		It was further proposed that this new IGFBP superfamily be subgrouped by
		The IGFBP superfamily is subgrouped into (A) IGFBPs (IGFBP-1 to -6); and (B) IGFBP-rPs (as indicated).
	edrv.endojournals.org /cgi/content/full/20/6/761 (9490 words)

	CE Ig Superfamily Members (Site not responding. Last check: 2007-10-21)
		The immunoglobulin superfamily members and their domain assignments with sequences regions can be found
		SAM-T98 and the HMM used can be obtained by clicking on the words.
		EST BLAST server at the DNA Data Bank of Japan.
	www.mrc-lmb.cam.ac.uk /genomes/CE_igs.html (222 words)

	TNF Receptor Nomenclature (Site not responding. Last check: 2007-10-21)
		tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain
		tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain
		tumor necrosis factor receptor superfamily, member 12 (translocating chain-association membrane protein)
	www.gene.ucl.ac.uk /nomenclature/genefamily/tnfrec2.html (107 words)

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