| |
| | Biopathways Graph Data Manager (BGDM) |
 | | I have broad interests in graphs, their role in databases and knowledge representation, graph algorithms (esp. parallel graph algorithms) for biology (phylogenetic tree construction, NMR peak assignment, shotgun sequence assembly, etc.), and graph grammars (for modeling graph query languages, evolution of biopathways, schema evolution and integration). |
 | | Adjacency matrices are binary matrices (for undirected graphs) which contain a 1 for element A(i,j) if there is an edge connecting node i to node j. |
 | | Graph matchings attempt to match entire graphs and are the graph analogs of global sequence alignments. |
| hpcrd.lbl.gov /staff/olken/graphdm/graphdm.htm (7829 words) |
|